/ **************************************
/ * sample.dsp.txt                     *
/ * sample input file for phyloBreakA2 *
/ * Chih-Horng Kuo                     *
/ * chkuo@uga.edu                      *
/ * 05/12/2004                         *
/ **************************************
/ This file is a sample input file for phyloBreakA2
/ "/" is the comment symbol, 
/ any line starts with "/" will be ignored by the program 
/
/ The following instruction lines (lines that do not start with a "/")
/ include all settings required for the program.
/ Each instruction line starts with a instruction symbol 
/ (to tell the program what does the number in this line mean)
/ and the actual parameter value.
/ Preferably the instruction symbol and parameter value(s)
/ are separated by a tab or space (to improve readibility). 

///////////////////////////////////////////////////////////
/ "#" is the symbol used to indicate number of iterations
/ the following line tells the program to run 10 iterations
/ (using the same parameter values)
#	10

///////////////////////////////////////////////////////////
/ "*" is the symbol used to indicate population size and sampling settings
/ the following line tells the program that: 
/   (1) population size (N) = 50
/   (2) number of location sampled = 6
/   (3) number of individuals sampled per location = 4
*	50	6	4	

///////////////////////////////////////////////////////////
/ "|" is the symbol used to indicate boundary and barrier settings
/ The first value followed "|" is the option for boundary and barrier types
/ Three different boundary type are available
/   Three possible values for this option setting:
/     optBoundary==1: ring-shaped habitat
/       if the determined movement crosses the boundary,
/       the indiviudal will come out from another end of the habitat
/       if a barrier presents, the habitat is divided into 2 separate rings
/     optBoundary==2: absorbing boundaries 
/       if the determined movement crosses the boundary,
/       the individual will stay at the edge
/     optBoundary==3: reflective boundaries 
/       if the determined movement crosses the boundary,
/       the individual will move toward the boundary,
/       and then bounce back toward the oppisite direction 
/ The second value is position of the geographic barrier
/   Note that the habitat array ranges from 0 to (N-1)
/     In this example, the possible position for any individual is 
/     a value between 0 and 49. 
/     A barrier position of 25 specifies that 
/     position 0-24 are on one side of the barrier 
/     and position 25-49 on the other
/ The third value is duration of the barrier
/
/ The following line tells the program that
/   (1) use reflecting boundary setting
/   (2) set barrier position to 25 (in the center of the habitat)
/   (3) the barrier was formed 10 generations ago
|	3	25	10

///////////////////////////////////////////////////////////
/ "^" is the symbol used to indicate how many entries (possible movements)
/ are included in the dispersal probability table
/ The following line tells the program that there are 5 entries
^	5

///////////////////////////////////////////////////////////
/ "@" is the symbol used to indicate 
/ the beginning of the dispersal probability table
/ The dispersal probability table lists the cumulative probability 
/ for each possible movement. 
/ Each entry of the dispersal probability table include 
/   (1) the movement value (negative - to the left, positive - to the right)
/   (2) the cumulative probability for that movement value
/ It is important that the last entry should have a cumulative prob of 1,
/ otherwise the program will display an error message and quit.
/ In the following example, an individual has
/   (1) a 0.05 probability of moving 2 steps to the left (movement=-2)
/   (2) a 0.20 probability of moving 1 steps to the left (movement=-1)
/   (3) a 0.50 probability of staying at the same position (movement=0)
/   (4) a 0.20 probability of moving 1 steps to the right (movement=1)
/   (5) a 0.05 probability of moving 1 steps to the right (movement=2)
@
-2  0.05
-1  0.25
0   0.75
1   0.95
2   1