Program name: genePed Version number: 2.0 Version date: 11/30/2006 Contact information Author: Chih-Horng Kuo and John Avise email: chkuo@uga.edu Web: http://chkuo.name/ Modules available: (0) End program (1) Module 1 (4 alleles, equal spacing at [0, 0.25, 0.5, 0.75]) (2) Module 2 (4 alleles, unequal spacing at [0, 0.125, 0.25, 0.5]) (3) Module 3 (5 alleles, equal spacing at [0, 0.2, 0.4, 0.6, 0.8]) Please select the module you want to use: Module selected = 1 Input file must be in the same directory as this program, The limitation of file name length is 80 characters. Please enter file name of the input file (Dispersal prob <.dsp>): Input file (dsp.txt) opened successfully. The limitation of file name length is 80 characters. Please enter file name of the output file (Report <.rep>): Output file (rep.txt) opened successfully. *** Start of header *** Program name: genePed Version number: 2.0 Release date: 11/30/2006 Contact information Author: Chih-Horng Kuo and John Avise email: chkuo@uga.edu Web: http://chkuo.name/ Run date and time: Mon Dec 11 15:00:37 2006 *** End of header *** Please enter the number of iterations: Please enter the number of independent pedigrees: Please enter the number of gene trees per pedigree: *** Start of Settings *** Input and output files Dispersal prob file: dsp.txt Report file: rep.txt User settings nPopSize = 100 nDispStep = 5 nIter = 10 nPedigree = 1 nTree = 1800 *** End of Settings *** initiating data arrays... data arrays initiated Input setting from dsp.txt nPopSize = 100 nDispStep = 5 dispStep dispProb -2 0.0500 -1 0.2500 0 0.7500 1 0.9500 2 1.0000 0 ********** *** Start of Summary *** Stat Mean Variance StdDev Max Min topologyFreqMax 0.1361 0.0004 0.0208 0.1833 0.1156 topologyFreqMin 0.0022 0.0000 0.0012 0.0044 0.0000 topologyFreqVar 0.0019 0.0000 0.0004 0.0028 0.0016 *** End of Summary *** *** Start of Topology Freq *** Iter Max Min Var Topo1 Topo2 Topo3 Topo4 Topo5 Topo6 Topo7 Topo8 Topo9 Topo10 Topo11 Topo12 Topo13 Topo14 Topo15 Topo16 Topo17 Topo18 1 0.1561 0.0017 0.0019 0.0506 0.0467 0.0806 0.0061 0.0033 0.0050 0.0611 0.0606 0.0922 0.0667 0.0628 0.0878 0.0022 0.0061 0.0017 0.1122 0.0983 0.1561 2 0.1350 0.0000 0.0018 0.1000 0.0778 0.1094 0.0056 0.0028 0.0050 0.0789 0.0844 0.1350 0.0678 0.0478 0.0972 0.0011 0.0000 0.0028 0.0578 0.0456 0.0811 3 0.1222 0.0033 0.0017 0.0806 0.0683 0.1156 0.0033 0.0056 0.0044 0.0478 0.0406 0.0850 0.0878 0.0872 0.1222 0.0044 0.0044 0.0044 0.0550 0.0817 0.1017 4 0.1156 0.0044 0.0016 0.0556 0.0578 0.0978 0.0050 0.0044 0.0044 0.0739 0.0928 0.1156 0.0622 0.0606 0.0967 0.0050 0.0056 0.0050 0.0911 0.0617 0.1050 5 0.1244 0.0017 0.0018 0.0600 0.0706 0.1244 0.0061 0.0067 0.0017 0.0717 0.0794 0.1156 0.0450 0.0494 0.0589 0.0044 0.0044 0.0017 0.0850 0.0944 0.1206 6 0.1472 0.0028 0.0017 0.0822 0.0789 0.1472 0.0028 0.0039 0.0056 0.0644 0.0656 0.0933 0.0522 0.0667 0.0733 0.0033 0.0044 0.0039 0.0700 0.0717 0.1106 7 0.1311 0.0017 0.0016 0.0550 0.0817 0.1311 0.0039 0.0050 0.0017 0.0611 0.0756 0.0933 0.0644 0.0778 0.1083 0.0056 0.0039 0.0039 0.0722 0.0650 0.0906 8 0.1250 0.0022 0.0018 0.0944 0.1083 0.1211 0.0044 0.0028 0.0022 0.0950 0.0717 0.1250 0.0617 0.0544 0.0956 0.0044 0.0072 0.0039 0.0372 0.0461 0.0644 9 0.1211 0.0022 0.0018 0.0600 0.0667 0.1156 0.0039 0.0039 0.0033 0.0744 0.1144 0.0806 0.0661 0.0417 0.0767 0.0033 0.0033 0.0022 0.1072 0.0556 0.1211 10 0.1833 0.0017 0.0028 0.0656 0.0467 0.0600 0.0056 0.0050 0.0017 0.0617 0.0628 0.1672 0.1139 0.0922 0.1833 0.0028 0.0089 0.0028 0.0294 0.0528 0.0378 *** End of Topology Freq *** Modules available: (0) End program (1) Module 1 (4 alleles, equal spacing at [0, 0.25, 0.5, 0.75]) (2) Module 2 (4 alleles, unequal spacing at [0, 0.125, 0.25, 0.5]) (3) Module 3 (5 alleles, equal spacing at [0, 0.2, 0.4, 0.6, 0.8]) Please select the module you want to use: Module selected = 0 *** Program ended. ***